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Showing posts with the label Bioinformatics
Trouble With Stacked Bar Graph Without Pooling

Trouble With Stacked Bar Graph Without Pooling

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I have a clear idea of what I would like to plot, but I am not sure where to start using matplotlib… Read more Trouble With Stacked Bar Graph Without Pooling
Python: Multiple Consensus Sequences

Python: Multiple Consensus Sequences

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starting from a list of dna sequences, I must have in return all the possible consensus (the result… Read more Python: Multiple Consensus Sequences
Getting Intersection Of Two Lists In Python

Getting Intersection Of Two Lists In Python

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I have two lists of genes that i'm analyzing. Essentially I want to sort the elements of these … Read more Getting Intersection Of Two Lists In Python
Convert Text File To Plink Ped And Map Format

Convert Text File To Plink Ped And Map Format

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I have the following data (small part of it) named 'short2_pre_snp_tumor.txt' rs987435 … Read more Convert Text File To Plink Ped And Map Format
Traceback In Smith-wateman Algorithm With Affine Gap Penalty

Traceback In Smith-wateman Algorithm With Affine Gap Penalty

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I'm trying to implement the Smith-Waterman algorithm for local sequence alignment using the aff… Read more Traceback In Smith-wateman Algorithm With Affine Gap Penalty
Single Linkage Clustering Of Edit Distance Matrix With Distance Threshold Stopping Criterion

Single Linkage Clustering Of Edit Distance Matrix With Distance Threshold Stopping Criterion

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I'm trying to assign flat, single-linkage clusters to sequence IDs separated by an edit distanc… Read more Single Linkage Clustering Of Edit Distance Matrix With Distance Threshold Stopping Criterion