Passing A Python Variable To R Using Rpy2
I have basic R script that performs a GLM on a MySQL dataset. This runs fine using Rscript in bash. However I would like to call it within a python script so I can add it to a loop
Solution 1:
Use double quotes around the "%s"
and single quotes around the robjects.r string:
robjects.r('results = fetch(dbSendQuery(mydb, "%s"))') % (sql_scores)
or use the format()
method:
robjects.r('fetch(dbSendQuery(mydb, {0}))'.format(sql_scores))
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